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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv1_015900_ycdz.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | bHLH | ||||||||
Protein Properties | Length: 288aa MW: 31209.9 Da PI: 9.4113 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.9 | 1.8e-08 | 180 | 220 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Bv1_015900_ycdz.t1 180 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 220 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.434 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-13 | 172 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-14 | 175 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-13 | 177 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.0E-6 | 181 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.65E-6 | 194 | 225 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048462 | Biological Process | carpel formation | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MDIDLLKSTP DDQIEMMLMT MHMDKTASDT SGGSFIDTAM MSFSCAAAGG GGSGSGSLPQ 60 HFNAQDHIPN SPTMLSPQTT ISFSNNNNNN NNNNNNNNIP STLLSSSFAS YSNNNSIDNA 120 SSFPASGTSS SSQKQTSMAA MREMIFRIAA MQPIYIDPEA VKPPKRRNVR ISKDPQSVAA 180 RHRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL KTQVQSLERA AINRPPIPPA 240 SAGLGFPVAM SSSSGYFPVT SHKPSNYSLA VQPHMNASHH NVQQFSDA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010688854.1 | 0.0 | PREDICTED: transcription factor HEC1-like | ||||
TrEMBL | A0A0J8D4V8 | 0.0 | A0A0J8D4V8_BETVU; Uncharacterized protein | ||||
STRING | VIT_18s0001g10400.t01 | 6e-77 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 4e-42 | bHLH family protein |